| 1996 | Indication | |
| Satoko Fujii / Natsuki Tamura | 1997 | How Many? |
| Satoko Fujii | 1999 | Kitsune-Bi |
| Satoko Fujii / Marc Dresser / Jim Black | 1999 | Toward, "TO WEST" |
| Satoko Fujii / Mark Feldman | 2001 | April Shower |
| Satoko Fujii / Natsuki Tamura | 2001 | Clouds |
| Satoko Fujii Quartet | 2001 | Vulcan |
| 2002 | Minerva | |
| Satoko Fujii & Tatsuya Yoshida | 2002 | Toh-Kichi |
| Satoko Fujii Orchestra | 2003 | The Future of the Past |
| Satoko Fujii Quartet | 2003 | Zephyros |
| Satoko Fujii / Tatsuya Yoshida | 2004 | Erans |
| Satoko Fujii / Natsuki Tamura / John Hollenbeck (Junk Box) | 2004 | Fragment |
| Satoko Fujii Four | 2004 | Live in Japan |
| Satoko Fujii Min-Yoh Ensemble | 2006 | Fujin Raijin |
| Satoko Fujii Orchestra Nagoya | 2006 | Maru |
| Satoko Fujii Quartet | 2007 | Bacchus |
| Satoko Fujii / Carla Kihlstedt | 2007 | Minamo |
| Satoko Fujii Ma-Do | 2008 | Heat Wave |
| Satoko Fujii Orchestra New York | 2008 | Summer Suite |
| Satoko Fujii Ma-Do | 2009 | Desert Ship |
| Satoko Fujii / Carla Kihlstedt (Minamo) | 2009 | Kuroi Kawa / Black River |
| Satoko Fujii / Myra Melford | 2009 | Under the Water |
| Satoko Fujii Orchestra Tokyo | 2010 | Zakopane |
